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index.html
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<!DOCTYPE html>
<html lang="en"><head>
<meta http-equiv="content-type" content="text/html; charset=UTF-8">
<meta charset="utf-8">
<meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
<meta name="description" content="">
<meta name="author" content="">
<!-- Bootstrap core CSS -->
<link rel="stylesheet" type="text/css" href="style/bootstrap.css">
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<!-- Custom styles for this template -->
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<title>Anil Thanki</title>
<!-- Global site tag (gtag.js) - Google Analytics -->
<script async src="https://www.googletagmanager.com/gtag/js?id=UA-66922730-1"></script>
<script>
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gtag('js', new Date());
gtag('config', 'UA-66922730-1');
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</head>
<body id="page-top">
<nav class="navbar navbar-expand-lg navbar-dark bg-primary fixed-top" id="sideNav">
<a class="navbar-brand js-scroll-trigger" href="#page-top">
<span class="d-block d-lg-none">Anil Thanki</span>
<span class="d-none d-lg-block">
<img class="img-fluid img-profile rounded-circle mx-auto mb-2" src="images/anil-thanki.jpg" alt="">
</span>
</a>
<button class="navbar-toggler" type="button" data-toggle="collapse" data-target="#navbarSupportedContent" aria-controls="navbarSupportedContent" aria-expanded="false" aria-label="Toggle navigation">
<span class="navbar-toggler-icon"></span>
</button>
<div class="collapse navbar-collapse" id="navbarSupportedContent">
<ul class="navbar-nav">
<!--<li class="nav-item">
Anil Thanki
</li>-->
<li class="nav-item"><a class="nav-link js-scroll-trigger" href="#about">About me</a></li>
<!--<li class="nav-item"><a class="nav-link js-scroll-trigger" href="#projects">Projects</a></li>-->
<li class="nav-item"><a class="nav-link js-scroll-trigger" href="#publications">Publications</a></li>
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<li class="nav-item"><a class="nav-link js-scroll-trigger" href="#contact">Contact</a></li>
<!--<li class="nav-item"><a class="nav-link js-scroll-trigger" href="/cv.html">CV</a></li>-->
<!--<li class="nav-item"><a class="nav-link js-scroll-trigger" href="#copyright" style="font-size:12px">Copyright</a></li>-->
</ul>
</div>
</nav>
<div class="container-fluid p-0">
<section class="resume-section p-3 p-lg-5 d-flex d-column" id="about">
<div class="my-auto">
<h1 class="mb-0">Anil
<span class="text-primary">Thanki</span>
</h1>
<span> </span>
<p class="mb-5 col-6">
Anil is a Senior Bioinformatician at the <a href="http://www.ebi.ac.uk/">European Bioinformatics Institute</a> before he worked as a Postdoctoral Research Scientist (2020 - 2022) and Scientific Programmer (2011 - 2020) at the <a href="http://www.earlham.ac.uk/">Earlham Institute</a>.
<br><br>
He has PhD in Bioinformatics from the <a href="http://www.uea.ac.uk/">University of East Anglia, UK</a>, Master of Science in Bioinformatics from the <a href="http://www.le.ac.uk/">University of Leicester, UK</a> and Bachelor of Science in Bioinformatics from <a href="https://saurashtrauniversity.edu/">Saurashtra University, India</a>.
<br><br>
His area of interest is Bioinformatics tools development, with an interest in Open Science. He is also interested in web-based Data Visualisation, especially using D3.js.
</p>
</div>
</section>
<section class="resume-section p-3 p-lg-5 d-flex d-column" id="publications">
<div class="my-auto">
<div class="resume-section-content">
<h2 class="mb-5">Selected Publications</h2>
<ol>
<li><p>The Galaxy platform for accessible, reproducible, and collaborative data analyses: 2024 update <b> Nucleic Acid Research</b> 2023 <a href="https://pubmed.ncbi.nlm.nih.gov/38769056/" target="_blank" rel="noopener noreferrer">PMID:38769056</a> </p></li>
<li><p>Expression Atlas update: insights from sequencing data at both bulk and single cell level <b> Nucleic Acid Research</b> 2023 <a href="https://pubmed.ncbi.nlm.nih.gov/37992296/" target="_blank" rel="noopener noreferrer">PMID:37992296</a> </p></li>
<li><p>Convergent gene loss in aquatic plants predicts new components of plant immunity and drought response <b>Plant Cell</b>, 2020, <a href="https://pubmed.ncbi.nlm.nih.gov/32409319/" target="_blank" rel="noopener noreferrer">PMID:32409319</a></p></li>
<li><p>TGAC Browser: An open-source genome browser for non-model organisms <b>bioRxiv</b>, 2019, <a href="https://www.biorxiv.org/content/10.1101/677658v1" target="_blank" rel="noopener noreferrer">DOI:10.1101/677658 </a></p></li>
<li><p>GeneSeqToFamily: a Galaxy workflow to find gene families based on the Ensembl Compara GeneTrees pipeline <b>GigaScience</b>, 2018, <a href="https://pubmed.ncbi.nlm.nih.gov/29425291/" target="_blank" rel="noopener noreferrer">PMID:29425291</a></p></li>
<li><p>Aequatus: An open-source homology browser <b>GigaScience</b>, 2018, <a href="https://pubmed.ncbi.nlm.nih.gov/30395211/" target="_blank" rel="noopener noreferrer">PMID:30395211</a></p></li>
<li><p>ViCTree: An automated framework for taxonomic classification from protein sequences <b>Bioinformatics</b>, 2018, <a href="https://pubmed.ncbi.nlm.nih.gov/29474519/" target="_blank" rel="noopener noreferrer">PMID:29474519</a></p></li>
<li><p>transPLANT Resources for Triticeae Genomic Data <b>The Plant Genome</b>, 2016, <a href="https://pubmed.ncbi.nlm.nih.gov/27898761/" target="_blank" rel="noopener noreferrer">PMID:27898761</a></p></li>
<li><p>BioJS: an open source standard for biological visualisation–its status in 2014 <b>F1000Research</b>, 2014, <a href="https://pubmed.ncbi.nlm.nih.gov/25075290/" target="_blank" rel="noopener noreferrer">PMID:25075290</a></p></li>
<li><p>Anatomy of BioJS, an open source community for the life sciences <b>eLife</b>, 2015, <a href="https://pubmed.ncbi.nlm.nih.gov/26153621/" target="_blank" rel="noopener noreferrer">PMID:26153621</a></p></li>
<li><p>StatsDB: platform-agnostic storage and understanding of next generation sequencing run metrics <b>F1000Research</b>, 2014, <a href="https://pubmed.ncbi.nlm.nih.gov/24627795/" target="_blank" rel="noopener noreferrer">PMID:24627795</a></p></li>
<li><p>wigExplorer, a BioJS component to visualise wig data <b>F1000 Research</b>, 2014, <a href="https://pubmed.ncbi.nlm.nih.gov/27781080/" target="_blank" rel="noopener noreferrer">PMID:27781080</a></p></li>
</ol>
</div>
</div>
</section>
<section class="resume-section p-3 p-lg-5 d-flex d-column" id="contact">
<div class="my-auto">
<h2 class="mb-5">Get in touch</h2>
<p>Feel free to get in touch through any of the social channels linked below.</p>
<div class="social-icons">
<ul class="list-inline list-social-icons mb-0">
<li class="list-inline-item">
<a href="https://twitter.com/anilthanki">
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<i class="fa fa-twitter fa-stack-1x fa-inverse"></i>
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<a href="https://www.linkedin.com/in/anilthanki/">
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