Skip to content

@MaayanLab Ma'ayan Lab

Change the repository type filter

All

    Repositories list

    376 repositories

    • DRC-Portals

      Public
      TypeScript
      •0•0•30•7•Updated Feb 23, 2025Feb 23, 2025

    • CFDECoauthorNetwork

      Public
      A fork to create the CFDECoauthorNetwork.
      JavaScript
      •
      Other
      •13•0•4•0•Updated Feb 22, 2025Feb 22, 2025

    • ChEA-KG-UI

      Public
      Knowledge-Graph-UI (KG-UI) is an open-source web-based user interface built for KGs stored in Neo4j. The UI features Cypher queries for viewing immediate neighbors as well as shortest paths between two entities. Additionally, the API can be extended to add other functions such as enrichment analysis, and specialized queries.
      TypeScript
      •
      GNU General Public License v3.0
      •13•0•0•0•Updated Feb 20, 2025Feb 20, 2025

    • Knowledge-Graph-UI

      Public
      Knowledge-Graph-UI (KG-UI) is an open-source web-based user interface built for KGs stored in Neo4j. The UI features Cypher queries for viewing immediate neighbors as well as shortest paths between two entities. Additionally, the API can be extended to add other functions such as enrichment analysis, and specialized queries.
      neo4jneo4j-databaseknowledge-graphcytoscapenetworksuser-interfacegeneset-enrichmentcytoscapejscypher-query-languagenetworkscience
      JavaScript
      •
      Other
      •13•7•5•1•Updated Feb 20, 2025Feb 20, 2025

    • archs4dx

      Public
      JavaScript
      •
      Apache License 2.0
      •0•0•7•0•Updated Feb 20, 2025Feb 20, 2025

    • archs4r

      Public
      R package to load and query ARCHS4 data in R
      R
      •
      Apache License 2.0
      •0•1•0•0•Updated Feb 19, 2025Feb 19, 2025

    • dokku

      Public
      Ma'ayanlab dokku server admin and user guide
      Shell
      •
      Other
      •0•2•0•1•Updated Feb 14, 2025Feb 14, 2025

    • blitzgsea

      Public
      Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for accurate p-value estimation.
      Jupyter Notebook
      •
      Apache License 2.0
      •9•41•1•0•Updated Feb 14, 2025Feb 14, 2025

    • datacrosswaysarchs4

      Public
      Python
      •
      Apache License 2.0
      •0•0•1•0•Updated Feb 12, 2025Feb 12, 2025

    • GeneSetCart

      Public
      GeneSetCart is an interactive web-based platform that enables investigators to gather gene sets from various sources; augment these sets with gene-gene co-expression correlations and protein-protein interactions; perform set operations on these sets such as union, consensus, and intersection; and visualize and analyze these gene sets.
      genomicsbiomedical-informaticsproteomicstranscriptomicsgeneset-enrichmentbiomedical-data-sciencegenesetsgeneset-enrichment-analysisproteomics-data-analysis
      TypeScript
      •
      GNU General Public License v3.0
      •0•0•4•0•Updated Feb 10, 2025Feb 10, 2025

    • archs4py

      Public
      Python package to load and query ARCHS4 data
      Python
      •
      Apache License 2.0
      •3•16•2•0•Updated Feb 6, 2025Feb 6, 2025

    • RummageneXRummaGEO

      Public
      Jupyter Notebook
      •0•0•2•0•Updated Jan 24, 2025Jan 24, 2025

    • KnowledgeGraphUIDemo

      Public
      KnowledgeGraph Demo
      Jupyter Notebook
      •11•0•0•0•Updated Jan 23, 2025Jan 23, 2025

    • prismexp

      Public
      Advanced gene function prediction
      Python
      •
      Apache License 2.0
      •0•7•2•0•Updated Jan 22, 2025Jan 22, 2025

    • Playbook-Workflow-Builder

      Public
      A repository for the Playbook Workflow Builder project.
      workflowdata-sciencebioinformaticsgene-setsbiologysystems-biologygene-expressiongene-ontologyproteomicscwl
      TypeScript
      •
      Creative Commons Attribution 4.0 International
      •18•11•39•0•Updated Jan 16, 2025Jan 16, 2025

    • GenesToWordCloud

      Public
      Remake of Genes2WordCloud
      JavaScript
      •0•0•0•0•Updated Jan 15, 2025Jan 15, 2025

    • ChEA-KG

      Public
      Demo of how to build a transcription factor KG using the KG UI
      Jupyter Notebook
      •11•0•0•0•Updated Jan 14, 2025Jan 14, 2025

    • HarmonizomePythonScripts

      Public
      Jupyter Notebook
      •10•23•0•1•Updated Jan 6, 2025Jan 6, 2025

    • hypothesispage

      Public
      Simple hypothesis page, much simpler just to show PrismExp results
      Jupyter Notebook
      •
      Apache License 2.0
      •0•0•0•0•Updated Dec 20, 2024Dec 20, 2024

    • rummagene

      Public
      Python
      •
      Other
      •3•9•6•0•Updated Dec 18, 2024Dec 18, 2024

    • EnrichrPythonScripts

      Public
      Python Jupyter notebooks for Enrichr species databases
      Jupyter Notebook
      •0•3•0•0•Updated Dec 11, 2024Dec 11, 2024

    • rummageo

      Public
      Jupyter Notebook
      •
      Other
      •3•2•1•0•Updated Dec 11, 2024Dec 11, 2024

    • Enrichr-Viz-Appyter

      Public
      Appyter for enrichr canvases, scatter plots, and Manhattan plots
      Jupyter Notebook
      •2•0•3•0•Updated Dec 3, 2024Dec 3, 2024

    • speedrichr

      Public
      Java
      •2•0•0•0•Updated Dec 3, 2024Dec 3, 2024

    • postgrest-drs

      Public
      A PostgREST powered DRS server
      PLpgSQL
      •
      Other
      •0•0•0•0•Updated Nov 21, 2024Nov 21, 2024

    • datadistillery-kg

      Public
      Jupyter Notebook
      •0•0•3•0•Updated Nov 19, 2024Nov 19, 2024

    • nbviewer

      Public
      nbconvert as a web service: Render Jupyter Notebooks as static web pages
      Python
      •
      Other
      •557•0•0•0•Updated Nov 12, 2024Nov 12, 2024

    • biojupies

      Public
      Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.
      cloudbioinformaticsrna-seqjupyterpipelinenotebooksystems-biologydcppc
      HTML
      •
      Other
      •30•111•42•42•Updated Nov 12, 2024Nov 12, 2024

    • lncRNAlyzr-issues

      Public
      A repo to report issues related the lncRNAlyzr app
      0•0•3•0•Updated Nov 10, 2024Nov 10, 2024

    • TargetRanger

      Public
      JavaScript
      •
      Other
      •0•0•0•0•Updated Nov 7, 2024Nov 7, 2024